Structure and content of the supplementary material associated with this article. Folders are marked with boxes. Scripts and instruction files are marked in bold purple. Required data input files are in italic. Four dedicated “README” files provide a specific introduction to the different families of examples. This material can be downloaded as free software (under the GNU General Public License version 3) from its dedicated Github repository (http://dx.doi.org/10.5281/zenodo.45079).